Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007300.1 Corchorus olitorius cultivar O-4 contig07325, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1746
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35


Found at i:857 original size:24 final size:23

Alignment explanation


    Indices: 782--840  Score: 118
    Period size: 23  Copynumber: 2.6  Consensus size: 23

        772 TGACGAACAC

                                   
        782 CAAGTTGGGGCCAACTTACCCCT
          1 CAAGTTGGGGCCAACTTACCCCT

                                   
        805 CAAGTTGGGGCCAACTTACCCCT
          1 CAAGTTGGGGCCAACTTACCCCT

                         
        828 CAAGTTGGGGCCA
          1 CAAGTTGGGGCCA

        841 GGTTGAACCC


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   36  1.00

ACGTcount: A:0.22, C:0.32, G:0.25, T:0.20


Consensus pattern (23 bp):   
CAAGTTGGGGCCAACTTACCCCT
Done.