Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007307.1 Corchorus olitorius cultivar O-4 contig07332, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 611

Length: 1019
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.29


Found at i:135 original size:9 final size:8

Alignment explanation


    Indices: 119--145  Score: 54
    Period size: 8  Copynumber: 3.4  Consensus size: 8

        109 ATCAAGTATT

                    
        119 CACCCCCC
          1 CACCCCCC

                    
        127 CACCCCCC
          1 CACCCCCC

                    
        135 CACCCCCC
          1 CACCCCCC

               
        143 CAC
          1 CAC

        146 ACTTAAAATT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   19  1.00

ACGTcount: A:0.15, C:0.85, G:0.00, T:0.00


Consensus pattern (8 bp):   
CACCCCCC
Done.