Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007316.1 Corchorus olitorius cultivar O-4 contig07341, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 714

Length: 1190
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31


Found at i:1063 original size:154 final size:154

Alignment explanation


    Indices: 633--1190  Score: 888
    Period size: 153  Copynumber: 3.6  Consensus size: 154

        623 ATTCGTATCA

                                *       *      *       *                     
        633 TAATCTCACCAAAATGATTACAGTTAGTTCATAAATAATGGAATGAAAAGCATTGAGGTTTGCCA
          1 TAATCTCACCAAAATGATTATAGTTAGTCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCA

                   *            *        *  *  *   *                         
        698 AATCGAAAACGATTCAAAACGGAACTAATAGGTCCTGATGGGCCCAAAATAACAAGTGTTCCAAA
         66 AATCGAAGACGATTCAAAACAGAACTAATGGGCCCAGATAGGCCCAAAATAACAAGTGTTCCAAA

                                    
        763 TGAGCTAAAAACTTCACAGTGGAC
        131 TGAGCTAAAAACTTCACAGTGGAC

                                                                             
        787 TAATCTCACCAAAATGATTATAGTTAGTCCATAAACAATGGAAA-AAAAGCATTGAGGTTTGCCA
          1 TAATCTCACCAAAATGATTATAGTTAGTCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCA

             *                                                          *    
        851 ACTCGAAGACGATTCAAAACAGAACTAATGGGCCCAGATAGGCCCAAAATAACAAGTGTTTCAAA
         66 AATCGAAGACGATTCAAAACAGAACTAATGGGCCCAGATAGGCCCAAAATAACAAGTGTTCCAAA

                        *           
        916 TGAGCTAAAAACATCACAGTGGAC
        131 TGAGCTAAAAACTTCACAGTGGAC

                *                       *      *                             
        940 TAATATCACCAAAATGATTATAGTTAGTTCATAAATAATGGAAAGAAAAGCATTGAGG-TTGCAC
          1 TAATCTCACCAAAATGATTATAGTTAGTCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGC-C

                                                *      *                     
       1004 AAATCGAAGACGATTCAAAACAGAACTAATGGGCCCCGATAGGTCCAAAATAACAAGTGTTCCAA
         65 AAATCGAAGACGATTCAAAACAGAACTAATGGGCCCAGATAGGCCCAAAATAACAAGTGTTCCAA

                               *     
       1069 ATGAGCTAAAAACTTCACAATGGAC
        130 ATGAGCTAAAAACTTCACAGTGGAC

                                   *                                         
       1094 TAATCTCACC-AAATGATTATAGATAGTCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCA
          1 TAATCTCACCAAAATGATTATAGTTAGTCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCA

                               **            
       1158 AATCGAAGACGATTCAAAATGGAACTAATGGGC
         66 AATCGAAGACGATTCAAAACAGAACTAATGGGC


Statistics
Matches: 373,  Mismatches: 28, Indels: 7
        0.91            0.07        0.02

Matches are distributed among these distances:
 153  222  0.60
 154  151  0.40

ACGTcount: A:0.42, C:0.17, G:0.18, T:0.22


Consensus pattern (154 bp):   
TAATCTCACCAAAATGATTATAGTTAGTCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCA
AATCGAAGACGATTCAAAACAGAACTAATGGGCCCAGATAGGCCCAAAATAACAAGTGTTCCAAA
TGAGCTAAAAACTTCACAGTGGAC
Done.