Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000732.1 Corchorus olitorius cultivar O-4 contig00732, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 662

Length: 1104
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32


Found at i:57 original size:33 final size:32

Alignment explanation


    Indices: 5--116  Score: 127
    Period size: 33  Copynumber: 3.4  Consensus size: 32

          1 ATCC

                           *                  
          5 AAAACAGAATTT-GTTTCATCACAAACAACACCT
          1 AAAACAG-ATTTAGTATCATCACAAACAACA-CT

                          *                 
         38 AAAACAGATTTAGTGTCATCACAAACAACACT
          1 AAAACAGATTTAGTATCATCACAAACAACACT

                **           *   *            
         70 CAAATTAGATTTAGTATTATCGCAAACAACATCT
          1 -AAAACAGATTTAGTATCATCACAAACAACA-CT

                         
        104 AAAACAGATTTAG
          1 AAAACAGATTTAG

        117 AATTACTCTT


Statistics
Matches: 68,  Mismatches: 8, Indels: 6
        0.83            0.10        0.07

Matches are distributed among these distances:
  32    6  0.09
  33   60  0.88
  34    2  0.03

ACGTcount: A:0.46, C:0.20, G:0.09, T:0.26


Consensus pattern (32 bp):   
AAAACAGATTTAGTATCATCACAAACAACACT
Done.