Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007324.1 Corchorus olitorius cultivar O-4 contig07349, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1852
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.35


Found at i:632 original size:27 final size:26

Alignment explanation


    Indices: 580--635  Score: 67
    Period size: 26  Copynumber: 2.1  Consensus size: 26

        570 GTGATTAGAT

                 *            * **    
        580 AAAAAGAATGGCAAAGATCTGGCCAA
          1 AAAAAAAATGGCAAAGATATAACCAA

                                       
        606 AAAAAAAATGGCAAAGATATAAACCAA
          1 AAAAAAAATGGCAAAGATAT-AACCAA

               
        633 AAA
          1 AAA

        636 GAGCAAAAAG


Statistics
Matches: 25,  Mismatches: 4, Indels: 1
        0.83            0.13        0.03

Matches are distributed among these distances:
  26   18  0.72
  27    7  0.28

ACGTcount: A:0.61, C:0.12, G:0.16, T:0.11


Consensus pattern (26 bp):   
AAAAAAAATGGCAAAGATATAACCAA
Done.