Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007329.1 Corchorus olitorius cultivar O-4 contig07354, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1933
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.31


Found at i:1216 original size:7 final size:7

Alignment explanation


    Indices: 1177--1215  Score: 53
    Period size: 7  Copynumber: 5.7  Consensus size: 7

       1167 GTTCTTAAAC

                   
       1177 AAAAATT
          1 AAAAATT

                   
       1184 AAAAATT
          1 AAAAATT

                   
       1191 AAAAATT
          1 AAAAATT

                 **
       1198 AAAAACG
          1 AAAAATT

                   
       1205 AAAAA-T
          1 AAAAATT

                 
       1211 AAAAA
          1 AAAAA

       1216 AAAGTTTTTT


Statistics
Matches: 29,  Mismatches: 3, Indels: 1
        0.88            0.09        0.03

Matches are distributed among these distances:
   6    5  0.17
   7   24  0.83

ACGTcount: A:0.77, C:0.03, G:0.03, T:0.18


Consensus pattern (7 bp):   
AAAAATT

Done.