Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000733.1 Corchorus olitorius cultivar O-4 contig00733, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 932

Length: 1554
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36


Found at i:1279 original size:30 final size:27

Alignment explanation


    Indices: 1223--1296  Score: 91
    Period size: 27  Copynumber: 2.7  Consensus size: 27

       1213 CCTATTGTTA

                              *        
       1223 AATA-ATATATATATA-TTATA-TACT
          1 AATATATATATATATACTAATACTACT

                                          
       1247 AATATACTATACTATACTACTAATACTACT
          1 AATATA-TATA-TATA-TACTAATACTACT

                                
       1277 AATATATATATATATACTAA
          1 AATATATATATATATACTAA

       1297 ATAGTATTTG


Statistics
Matches: 43,  Mismatches: 1, Indels: 9
        0.81            0.02        0.17

Matches are distributed among these distances:
  24    4  0.09
  25    1  0.02
  26    4  0.09
  27   10  0.23
  28    6  0.14
  29    8  0.19
  30   10  0.23

ACGTcount: A:0.49, C:0.11, G:0.00, T:0.41


Consensus pattern (27 bp):   
AATATATATATATATACTAATACTACT
Done.