Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007330.1 Corchorus olitorius cultivar O-4 contig07355, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 622

Length: 1037
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31


Found at i:524 original size:8 final size:9

Alignment explanation


    Indices: 497--525  Score: 51
    Period size: 9  Copynumber: 3.3  Consensus size: 9

        487 CCCAAATTAC

                     
        497 TTATGGAAA
          1 TTATGGAAA

                     
        506 TTATGGAAA
          1 TTATGGAAA

                     
        515 TTAT-GAAA
          1 TTATGGAAA

               
        523 TTA
          1 TTA

        526 AATGAATTAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
   8    7  0.35
   9   13  0.65

ACGTcount: A:0.45, C:0.00, G:0.17, T:0.38


Consensus pattern (9 bp):   
TTATGGAAA
Done.