Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007332.1 Corchorus olitorius cultivar O-4 contig07357, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 903

Length: 1505
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.34


Found at i:1119 original size:18 final size:18

Alignment explanation


    Indices: 1098--1134  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1088 TCAATTTTTG

                    **        
       1098 GCAATTTTTCATGTTCTT
          1 GCAATTTTGAATGTTCTT

                              
       1116 GCAATTTTGAATGTTCTT
          1 GCAATTTTGAATGTTCTT

             
       1134 G
          1 G

       1135 GTGTTTTTAA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.19, C:0.14, G:0.16, T:0.51


Consensus pattern (18 bp):   
GCAATTTTGAATGTTCTT

Found at i:1329 original size:30 final size:30

Alignment explanation


    Indices: 1293--1358  Score: 96
    Period size: 30  Copynumber: 2.2  Consensus size: 30

       1283 CCATGTGGGC

                       *     *       *    
       1293 ATACACGTGCCGTCCACGTCAGTGCCTGTT
          1 ATACACGTGCCATCCACATCAGTGCATGTT

                     *                    
       1323 ATACACGTGTCATCCACATCAGTGCATGTT
          1 ATACACGTGCCATCCACATCAGTGCATGTT

                  
       1353 ATACAC
          1 ATACAC

       1359 ACTCCCCAGC


Statistics
Matches: 32,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  30   32  1.00

ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27


Consensus pattern (30 bp):   
ATACACGTGCCATCCACATCAGTGCATGTT
Done.