Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007352.1 Corchorus olitorius cultivar O-4 contig07377, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 890

Length: 1484
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.40


Found at i:921 original size:26 final size:27

Alignment explanation


    Indices: 857--929  Score: 112
    Period size: 27  Copynumber: 2.7  Consensus size: 27

        847 AGGGTCACAT

                               *       
        857 AGGGGCATTTTGGTCATTTGCACATTC
          1 AGGGGCATTTTGGTCATTTTCACATTC

                                *      
        884 AGGGGCATTTTGGTCATTTTTACATT-
          1 AGGGGCATTTTGGTCATTTTCACATTC

            *                   
        910 GGGGGCATTTTGGTCATTTT
          1 AGGGGCATTTTGGTCATTTT

        930 AGGTTCACTT


Statistics
Matches: 43,  Mismatches: 3, Indels: 1
        0.91            0.06        0.02

Matches are distributed among these distances:
  26   19  0.44
  27   24  0.56

ACGTcount: A:0.16, C:0.14, G:0.27, T:0.42


Consensus pattern (27 bp):   
AGGGGCATTTTGGTCATTTTCACATTC
Done.