Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007356.1 Corchorus olitorius cultivar O-4 contig07381, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 909

Length: 1516
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32


Found at i:1179 original size:64 final size:63

Alignment explanation


    Indices: 1078--1203  Score: 225
    Period size: 64  Copynumber: 2.0  Consensus size: 63

       1068 TCCTTTTTAA

                 *        *                                                 
       1078 ACTTTTAGTGTTCTTGTAGTAGAACATCACCAGATTTATAATTTAAAACCCCTTCTTAATTATG
          1 ACTTTCAGTGTTCTCGTAGTAGAACATCACCAGATTTATAATTTAAAA-CCCTTCTTAATTATG

                                                                          
       1142 ACTTTCAGTGTTCTCGTAGTAGAACATCACCAGATTTATAATTTAAAACCCTTCTTAATTAT
          1 ACTTTCAGTGTTCTCGTAGTAGAACATCACCAGATTTATAATTTAAAACCCTTCTTAATTAT

       1204 ATGATGTATA


Statistics
Matches: 60,  Mismatches: 2, Indels: 1
        0.95            0.03        0.02

Matches are distributed among these distances:
  63   14  0.23
  64   46  0.77

ACGTcount: A:0.32, C:0.18, G:0.10, T:0.40


Consensus pattern (63 bp):   
ACTTTCAGTGTTCTCGTAGTAGAACATCACCAGATTTATAATTTAAAACCCTTCTTAATTATG
Done.