Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007357.1 Corchorus olitorius cultivar O-4 contig07382, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 872

Length: 1454
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35


Found at i:760 original size:20 final size:21

Alignment explanation


    Indices: 723--773  Score: 59
    Period size: 20  Copynumber: 2.4  Consensus size: 21

        713 AGGTATAACT

                     *            
        723 ATATATATTTTTTGAATTATAA
          1 ATATATA-TATTTGAATTATAA

                               **
        745 ATATATATATTT-AATTATTT
          1 ATATATATATTTGAATTATAA

                     
        765 ATATATATA
          1 ATATATATA

        774 ATAAAACTAA


Statistics
Matches: 26,  Mismatches: 3, Indels: 2
        0.84            0.10        0.06

Matches are distributed among these distances:
  20   15  0.58
  21    4  0.15
  22    7  0.27

ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55


Consensus pattern (21 bp):   
ATATATATATTTGAATTATAA
Done.