Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007363.1 Corchorus olitorius cultivar O-4 contig07388, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 634

Length: 1057
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.35


Found at i:1044 original size:198 final size:198

Alignment explanation


    Indices: 674--1057  Score: 520
    Period size: 198  Copynumber: 1.9  Consensus size: 198

        664 CTTTATATTA

                                *                 *             *            
        674 AGGATTATTATACAAATACATTGTCAATGTAAATTTTGGACTCCATAAGCGGGTTAAGAAATTGA
          1 AGGATTATTATACAAATACACTGTCAATGTAAATTTTGAACTCCATAAGCGGATTAAGAAATTGA

                                  *        ***                    *          
        739 CACATACCCCAATTCATAATTACTTAAATATTTGATATTAATCATATTCCCTAAGAGAACACATG
         66 CACATACCCCAATTCATAATTAATTAAATATAAAATATTAATCATATTCCCTAAAAGAACACATG

                     *                                   *                   
        804 TCAACCCTTCAACCATGCACGTGCAGTCTACTAAACTCCACTGACGGTGTATTGTATAATTTTTT
        131 TCAACCCTTAAACCATGCACGTGCAGTCTACTAAACTCCACTGACAGTGTATTGTATAATTTTTT

               
        869 TAT
        196 TAT

                                      *                                  *   
        872 AGGATTATTATAC-AATACACTGTCAGTGTAAATTTTGAACTCCATAA-CTGGATTAAGAAGTTG
          1 AGGATTATTATACAAATACACTGTCAATGTAAATTTTGAACTCCATAAGC-GGATTAAGAAATTG

               *      * *              *                       *       *     
        935 ACATATACCCTATTTCATAATTAATTAGATATAAAATATTAATACATATTCTCTAAAAGGACACA
         65 ACACATACCCCAATTCATAATTAATTAAATATAAAATATTAAT-CATATTCCCTAAAAGAACACA

                            *  **   *      *     *                    
       1000 TGTCAACCCTTAAACCCTGTGCGTTCAGTCTGCTAAATTCCACTGACAGTGTATTGTA
        129 TGTCAACCCTTAAACCATGCACGTGCAGTCTACTAAACTCCACTGACAGTGTATTGTA


Statistics
Matches: 160,  Mismatches: 24, Indels: 4
        0.85            0.13        0.02

Matches are distributed among these distances:
 196    1  0.01
 197   78  0.49
 198   81  0.51

ACGTcount: A:0.35, C:0.18, G:0.13, T:0.33


Consensus pattern (198 bp):   
AGGATTATTATACAAATACACTGTCAATGTAAATTTTGAACTCCATAAGCGGATTAAGAAATTGA
CACATACCCCAATTCATAATTAATTAAATATAAAATATTAATCATATTCCCTAAAAGAACACATG
TCAACCCTTAAACCATGCACGTGCAGTCTACTAAACTCCACTGACAGTGTATTGTATAATTTTTT
TAT
Done.