Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007371.1 Corchorus olitorius cultivar O-4 contig07396, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 644

Length: 1074
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28


Found at i:987 original size:76 final size:76

Alignment explanation


    Indices: 850--1000  Score: 191
    Period size: 76  Copynumber: 2.0  Consensus size: 76

        840 ACAAGGACCT

                                                               *           * 
        850 CGACTCCACCTGGGCGCCCACATGGTTGTCTTGAGCACCCATGTGGTTTGCTTGAGAACCCAGGT
          1 CGACTCCACCTGGGCGCCCACATGGTTGTCTTGAGCACCCATGTGGTTTGCCTGAGAACCCAGAT

                       
        915 GGGCAGTGTCA
         66 GGGCAGTGTCA

                    *     *                                           **     
        926 CGACTCCAGCTGGGTGCCCACATGGTTTGTC-TGAAG-ACCCATGT-GTTTCGCCTGATCACCCA
          1 CGACTCCACCTGGGCGCCCACATGG-TTGTCTTG-AGCACCCATGTGGTTT-GCCTGAGAACCCA

                   *     
        988 GATGGGCTGTGTC
         63 GATGGGCAGTGTC

       1001 TTAGCTCATC


Statistics
Matches: 65,  Mismatches: 7, Indels: 6
        0.83            0.09        0.08

Matches are distributed among these distances:
  75    4  0.06
  76   54  0.83
  77    7  0.11

ACGTcount: A:0.17, C:0.29, G:0.29, T:0.25


Consensus pattern (76 bp):   
CGACTCCACCTGGGCGCCCACATGGTTGTCTTGAGCACCCATGTGGTTTGCCTGAGAACCCAGAT
GGGCAGTGTCA
Done.