Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007375.1 Corchorus olitorius cultivar O-4 contig07400, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 768

Length: 1281
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38


Found at i:645 original size:16 final size:17

Alignment explanation


    Indices: 620--652  Score: 50
    Period size: 16  Copynumber: 2.0  Consensus size: 17

        610 TTTGATTAAC

                             
        620 ATATAATAAT-AATAAT
          1 ATATAATAATGAATAAT

                 *           
        636 ATATACTAATGAATAAT
          1 ATATAATAATGAATAAT

        653 TACAATATTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  16    9  0.60
  17    6  0.40

ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36


Consensus pattern (17 bp):   
ATATAATAATGAATAAT
Done.