Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007384.1 Corchorus olitorius cultivar O-4 contig07409, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 772

Length: 1288
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.33


Found at i:492 original size:11 final size:11

Alignment explanation


    Indices: 476--510  Score: 54
    Period size: 11  Copynumber: 3.2  Consensus size: 11

        466 CAATTCTTTA

                       
        476 TTTCTTTATTT
          1 TTTCTTTATTT

                       
        487 TTTCTTTATTT
          1 TTTCTTTATTT

                        
        498 CTTTCTTT-TTT
          1 -TTTCTTTATTT

              
        509 TT
          1 TT

        511 ATTTAAAGGT


Statistics
Matches: 23,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  10    2  0.09
  11   14  0.61
  12    7  0.30

ACGTcount: A:0.06, C:0.11, G:0.00, T:0.83


Consensus pattern (11 bp):   
TTTCTTTATTT

Found at i:493 original size:19 final size:19

Alignment explanation


    Indices: 469--508  Score: 71
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        459 CCAAGTCCAA

                               
        469 TTCTTTATTTCTTTATTTT
          1 TTCTTTATTTCTTTATTTT

                          *    
        488 TTCTTTATTTCTTTCTTTT
          1 TTCTTTATTTCTTTATTTT

              
        507 TT
          1 TT

        509 TTATTTAAAG


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.07, C:0.12, G:0.00, T:0.80


Consensus pattern (19 bp):   
TTCTTTATTTCTTTATTTT
Done.