Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007394.1 Corchorus olitorius cultivar O-4 contig07419, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 780

Length: 1300
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29


Found at i:774 original size:21 final size:21

Alignment explanation


    Indices: 750--862  Score: 140
    Period size: 21  Copynumber: 5.4  Consensus size: 21

        740 CTTAGGCATT

                         *       
        750 TCCAATGAGCTTGAAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *            
        771 TCCAATGATCTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *    *     * 
        792 TCCAATGAACTTGTAACCTGC
          1 TCCAATGAGCTTGGAACCTTC

                                 *
        813 TCCAATGAGCTTGGAA-CTTGA
          1 TCCAATGAGCTTGGAACCTT-C

                                  
        834 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                    
        855 TCCAATGA
          1 TCCAATGA

        863 ACTTCTAGCA


Statistics
Matches: 81,  Mismatches: 10, Indels: 2
        0.87            0.11        0.02

Matches are distributed among these distances:
  20    2  0.02
  21   79  0.98

ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29


Consensus pattern (21 bp):   
TCCAATGAGCTTGGAACCTTC

Done.