Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007397.1 Corchorus olitorius cultivar O-4 contig07422, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 664

Length: 1108
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29


Found at i:157 original size:11 final size:11

Alignment explanation


    Indices: 108--165  Score: 55
    Period size: 11  Copynumber: 5.1  Consensus size: 11

         98 AATATTTAAA

                       
        108 TAAAAAATAAT
          1 TAAAAAATAAT

             *    *     
        119 TGAAAATTAAAT
          1 TAAAAAAT-AAT

                         
        131 TATAAAAATCAA-
          1 TA-AAAAAT-AAT

                       
        143 TAAAAAATAAT
          1 TAAAAAATAAT

                 *     
        154 TAAAAGATAAT
          1 TAAAAAATAAT

             
        165 T
          1 T

        166 TTAGATTTTG


Statistics
Matches: 38,  Mismatches: 6, Indels: 6
        0.76            0.12        0.12

Matches are distributed among these distances:
  10    2  0.05
  11   23  0.61
  12    6  0.16
  13    7  0.18

ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29


Consensus pattern (11 bp):   
TAAAAAATAAT
Done.