Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007398.1 Corchorus olitorius cultivar O-4 contig07423, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 723

Length: 1205
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35


Found at i:237 original size:39 final size:39

Alignment explanation


    Indices: 194--272  Score: 140
    Period size: 39  Copynumber: 2.0  Consensus size: 39

        184 TCTGTTTGCC

                                       *           
        194 TACTTATTAAAGTAGGCAACATAAACTCTTTTTGTGTAT
          1 TACTTATTAAAGTAGGCAACATAAACTATTTTTGTGTAT

                                *                  
        233 TACTTATTAAAGTAGGCAACTTAAACTATTTTTGTGTAT
          1 TACTTATTAAAGTAGGCAACATAAACTATTTTTGTGTAT

             
        272 T
          1 T

        273 TGTAGTTGAA


Statistics
Matches: 38,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  39   38  1.00

ACGTcount: A:0.33, C:0.11, G:0.13, T:0.43


Consensus pattern (39 bp):   
TACTTATTAAAGTAGGCAACATAAACTATTTTTGTGTAT
Done.