Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007406.1 Corchorus olitorius cultivar O-4 contig07431, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 637

Length: 1062
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27


Found at i:733 original size:21 final size:21

Alignment explanation


    Indices: 709--753  Score: 54
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        699 GGCGCCCACA

                         *     * 
        709 TGGTTGCCTTGAGCACCCATG
          1 TGGTTGCCTTGAGAACCCAGG

                 **              
        730 TGGTTTTCTTGAGAACCCAGG
          1 TGGTTGCCTTGAGAACCCAGG

               
        751 TGG
          1 TGG

        754 GCAGTGTCAC


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.16, C:0.22, G:0.31, T:0.31


Consensus pattern (21 bp):   
TGGTTGCCTTGAGAACCCAGG
Done.