Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000741.1 Corchorus olitorius cultivar O-4 contig00741, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12676
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.31


Found at i:10116 original size:13 final size:13

Alignment explanation


    Indices: 10098--10122  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

      10088 TTACCTCAAA

                         
      10098 AAAAAAAAAAAAG
          1 AAAAAAAAAAAAG

                        
      10111 AAAAAAAAAAAA
          1 AAAAAAAAAAAA

      10123 ACAAGCGTTT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.96, C:0.00, G:0.04, T:0.00


Consensus pattern (13 bp):   
AAAAAAAAAAAAG

Found at i:10116 original size:14 final size:14

Alignment explanation


    Indices: 10097--10123  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

      10087 GTTACCTCAA

                          
      10097 AAAAAAAAAAAAAG
          1 AAAAAAAAAAAAAG

                         
      10111 AAAAAAAAAAAAA
          1 AAAAAAAAAAAAA

      10124 CAAGCGTTTC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.96, C:0.00, G:0.04, T:0.00


Consensus pattern (14 bp):   
AAAAAAAAAAAAAG
Done.