Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007411.1 Corchorus olitorius cultivar O-4 contig07436, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 600

Length: 1001
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30


Found at i:159 original size:42 final size:43

Alignment explanation


    Indices: 108--201  Score: 120
    Period size: 45  Copynumber: 2.2  Consensus size: 43

         98 AGTGCATTAC

                                    *     *  *         
        108 CTAA-ATTCTA-CTCCATCTCTAGGTAATTTATTAAAATAAAG
          1 CTAATATTCTACCTCCATCTCTAGATAATTCATCAAAATAAAG

                                                         
        149 CTAATATTCTACTCCTCCATCTCTAGATAATTCATCAAAATAAAG
          1 CTAATATTCTA--CCTCCATCTCTAGATAATTCATCAAAATAAAG

            *       
        194 TTAATATT
          1 CTAATATT

        202 GATTTTTGTT


Statistics
Matches: 45,  Mismatches: 4, Indels: 4
        0.85            0.08        0.08

Matches are distributed among these distances:
  41    4  0.09
  42    6  0.13
  45   35  0.78

ACGTcount: A:0.38, C:0.19, G:0.05, T:0.37


Consensus pattern (43 bp):   
CTAATATTCTACCTCCATCTCTAGATAATTCATCAAAATAAAG
Done.