Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007417.1 Corchorus olitorius cultivar O-4 contig07442, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 746

Length: 1244
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27


Found at i:832 original size:2 final size:2

Alignment explanation


    Indices: 760--824  Score: 56
    Period size: 2  Copynumber: 36.5  Consensus size: 2

        750 TCGAAACTTA

                                                       *  *               
        760 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AC AA AT -T AT AT A-
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

                                                          
        799 AT -T AT -T AT -T AT -T AT AT -T AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

        825 ACATATATTT


Statistics
Matches: 53,  Mismatches: 2, Indels: 16
        0.75            0.03        0.23

Matches are distributed among these distances:
   1    8  0.15
   2   45  0.85

ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT
Done.