Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007428.1 Corchorus olitorius cultivar O-4 contig07453, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 926

Length: 1544
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35


Found at i:503 original size:23 final size:24

Alignment explanation


    Indices: 447--503  Score: 71
    Period size: 24  Copynumber: 2.4  Consensus size: 24

        437 CCCGTTGAGG

                     *   *          
        447 AAATGTTTTATAACTGCTTTATAT
          1 AAATGTTTTGTAAATGCTTTATAT

                 *          *       
        471 AAATGCTTTGTAAATGTTTTA-AT
          1 AAATGTTTTGTAAATGCTTTATAT

                      
        494 AAATGTTTTG
          1 AAATGTTTTG

        504 GGTGCATAAG


Statistics
Matches: 28,  Mismatches: 5, Indels: 1
        0.82            0.15        0.03

Matches are distributed among these distances:
  23   11  0.39
  24   17  0.61

ACGTcount: A:0.33, C:0.05, G:0.12, T:0.49


Consensus pattern (24 bp):   
AAATGTTTTGTAAATGCTTTATAT
Done.