Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007433.1 Corchorus olitorius cultivar O-4 contig07458, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 937

Length: 1562
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35


Found at i:1202 original size:23 final size:27

Alignment explanation


    Indices: 1150--1199  Score: 70
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       1140 TTATGTTCGT

                                       
       1150 TTATATTATATATTATATATATAATAA
          1 TTATATTATATATTATATATATAATAA

                     *                
       1177 TTATATT-TTTATT-TATATA-AATA
          1 TTATATTATATATTATATATATAATA

       1200 TTAAAATATG


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  24    4  0.18
  25    6  0.27
  26    5  0.23
  27    7  0.32

ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56


Consensus pattern (27 bp):   
TTATATTATATATTATATATATAATAA

Found at i:1248 original size:40 final size:41

Alignment explanation


    Indices: 1164--1250  Score: 108
    Period size: 40  Copynumber: 2.1  Consensus size: 41

       1154 ATTATATATT

                                      *          *   
       1164 ATATATATAATAATTATATTTTTATTTATATAAATATTAAA
          1 ATATATATAATAATTATATTTTTATTCATATAAATATAAAA

                *                                      
       1205 ATATGTAT-ATAATTATA-TTTTATTCCATAT-AATATAAATA
          1 ATATATATAATAATTATATTTTTATT-CATATAAATATAAA-A

                  
       1245 ATATAT
          1 ATATAT

       1251 TTATTCCAAA


Statistics
Matches: 40,  Mismatches: 4, Indels: 5
        0.82            0.08        0.10

Matches are distributed among these distances:
  39   14  0.35
  40   19  0.47
  41    7  0.17

ACGTcount: A:0.47, C:0.02, G:0.01, T:0.49


Consensus pattern (41 bp):   
ATATATATAATAATTATATTTTTATTCATATAAATATAAAA
Done.