Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007442.1 Corchorus olitorius cultivar O-4 contig07467, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 703

Length: 1172
ACGTcount: A:0.33, C:0.11, G:0.13, T:0.43


Found at i:109 original size:20 final size:20

Alignment explanation


    Indices: 80--117  Score: 67
    Period size: 20  Copynumber: 1.9  Consensus size: 20

         70 AATATTTCTA

                                
         80 AATTGACATTACTTTTTTTT
          1 AATTGACATTACTTTTTTTT

                 *            
        100 AATTGTCATTACTTTTTT
          1 AATTGACATTACTTTTTT

        118 AGAGTAAATT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.24, C:0.11, G:0.05, T:0.61


Consensus pattern (20 bp):   
AATTGACATTACTTTTTTTT

Done.