Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007468.1 Corchorus olitorius cultivar O-4 contig07493, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 851

Length: 1419
ACGTcount: A:0.45, C:0.10, G:0.11, T:0.34


Found at i:807 original size:122 final size:128

Alignment explanation


    Indices: 565--818  Score: 385
    Period size: 122  Copynumber: 2.0  Consensus size: 128

        555 CATTAAGAAA

                                                                             
        565 TATATTTAAAAAATTCTAATATATATAAGTTTTTTAAATAAAATAGTAAAATGGTAAAAATAAAA
          1 TATATTTAAAAAATTCTAATATATATAAGTTTTTTAAATAAAATAGTAAAATGGT---AATAAAA

              *                                                        *     
        630 TAGATATAAGGATATTAGATTTAATTAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTGTAAAA
         63 TACATATAAGGATATTAGATTTAATTAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTATAAAA

             
        695 G
        128 G

                                        *        *                           
        696 TATATTT-AAAAATTCTAATATATATAATTTTTTTAATTAAAATAGTAAAATGGT-A-AAAAT-C
          1 TATATTTAAAAAATTCTAATATATATAAGTTTTTTAAATAAAATAGTAAAATGGTAATAAAATAC

                                           *                      *        
        757 ATA-AA-GATATTAGATTTAATTAAATAAAATTAGAGTTTTTAGTTGAGTAAAATTATAAAAG
         66 ATATAAGGATATTAGATTTAATTAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTATAAAAG

             
        818 T
          1 T

        819 TTAAACAATG


Statistics
Matches: 117,  Mismatches: 6, Indels: 9
        0.89            0.05        0.07

Matches are distributed among these distances:
 122   54  0.46
 123    2  0.02
 124    3  0.03
 125    5  0.04
 126    1  0.01
 130   45  0.38
 131    7  0.06

ACGTcount: A:0.50, C:0.02, G:0.10, T:0.38


Consensus pattern (128 bp):   
TATATTTAAAAAATTCTAATATATATAAGTTTTTTAAATAAAATAGTAAAATGGTAATAAAATAC
ATATAAGGATATTAGATTTAATTAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTATAAAAG
Done.