Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007469.1 Corchorus olitorius cultivar O-4 contig07494, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 991

Length: 1652
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.29


Found at i:539 original size:16 final size:16

Alignment explanation


    Indices: 518--553  Score: 63
    Period size: 16  Copynumber: 2.2  Consensus size: 16

        508 TGTTATCATT

                            
        518 ATATATATGATATATA
          1 ATATATATGATATATA

                           *
        534 ATATATATGATATATG
          1 ATATATATGATATATA

                
        550 ATAT
          1 ATAT

        554 GATGGTATAG


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  16   19  1.00

ACGTcount: A:0.47, C:0.00, G:0.08, T:0.44


Consensus pattern (16 bp):   
ATATATATGATATATA
Done.