Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000747.1 Corchorus olitorius cultivar O-4 contig00747, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 790

Length: 1318
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.36


Found at i:1202 original size:14 final size:14

Alignment explanation


    Indices: 1183--1215  Score: 57
    Period size: 14  Copynumber: 2.4  Consensus size: 14

       1173 TTTCATAGAC

                          
       1183 TATTTCACTTGGAT
          1 TATTTCACTTGGAT

                   *      
       1197 TATTTCATTTGGAT
          1 TATTTCACTTGGAT

                 
       1211 TATTT
          1 TATTT

       1216 TAATATATAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  14   18  1.00

ACGTcount: A:0.21, C:0.09, G:0.12, T:0.58


Consensus pattern (14 bp):   
TATTTCACTTGGAT
Done.