Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007471.1 Corchorus olitorius cultivar O-4 contig07496, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7782
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31


Found at i:1345 original size:14 final size:14

Alignment explanation


    Indices: 1326--1355  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       1316 TTGTATTATT

                          
       1326 ATGTTCTAGAGACA
          1 ATGTTCTAGAGACA

                       *  
       1340 ATGTTCTAGAGGCA
          1 ATGTTCTAGAGACA

              
       1354 AT
          1 AT

       1356 ATTCCAGTTC


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.33, C:0.13, G:0.23, T:0.30


Consensus pattern (14 bp):   
ATGTTCTAGAGACA

Found at i:7752 original size:2 final size:2

Alignment explanation


    Indices: 7745--7779  Score: 70
    Period size: 2  Copynumber: 17.5  Consensus size: 2

       7735 TTTCTAAGGA

                                                                
       7745 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       7780 GTT


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   33  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.