Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007472.1 Corchorus olitorius cultivar O-4 contig07497, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 897

Length: 1495
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35


Found at i:773 original size:16 final size:17

Alignment explanation


    Indices: 742--776  Score: 54
    Period size: 16  Copynumber: 2.1  Consensus size: 17

        732 CTCTTGCATG

                *            
        742 AAAGCATTTCTTTTTTA
          1 AAAGAATTTCTTTTTTA

                             
        759 AAAGAATTT-TTTTTTA
          1 AAAGAATTTCTTTTTTA

              
        775 AA
          1 AA

        777 CTACCCTTTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  16    9  0.53
  17    8  0.47

ACGTcount: A:0.37, C:0.06, G:0.06, T:0.51


Consensus pattern (17 bp):   
AAAGAATTTCTTTTTTA
Done.