Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007473.1 Corchorus olitorius cultivar O-4 contig07498, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1849
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.29


Found at i:833 original size:21 final size:21

Alignment explanation


    Indices: 809--881  Score: 83
    Period size: 21  Copynumber: 3.4  Consensus size: 21

        799 GGCTTGGAAT

                                 
        809 GGTGATGGCACGGGCATGGCC
          1 GGTGATGGCACGGGCATGGCC

                *          * **  
        830 GGTGGTGGCACGGGCTTAACC
          1 GGTGATGGCACGGGCATGGCC

                           *      
        851 GGTGATGGCACGGTGAATGGCC
          1 GGTGATGGCACGG-GCATGGCC

               *     
        873 GGTAATGGC
          1 GGTGATGGC

        882 TTGGTAGTGG


Statistics
Matches: 41,  Mismatches: 10, Indels: 1
        0.79            0.19        0.02

Matches are distributed among these distances:
  21   29  0.71
  22   12  0.29

ACGTcount: A:0.16, C:0.21, G:0.45, T:0.18


Consensus pattern (21 bp):   
GGTGATGGCACGGGCATGGCC
Done.