Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007474.1 Corchorus olitorius cultivar O-4 contig07499, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 607

Length: 1012
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34


Found at i:575 original size:17 final size:17

Alignment explanation


    Indices: 553--592  Score: 55
    Period size: 17  Copynumber: 2.4  Consensus size: 17

        543 ATCACCCCCT

                   *          
        553 AGATCACTAGTGAT-CTA
          1 AGATCACCAGTGATGC-A

                             
        570 AGATCACCAGTGATGCA
          1 AGATCACCAGTGATGCA

                  
        587 AGATCA
          1 AGATCA

        593 ATGGTAATCT


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  17   20  0.95
  18    1  0.05

ACGTcount: A:0.38, C:0.20, G:0.20, T:0.23


Consensus pattern (17 bp):   
AGATCACCAGTGATGCA
Done.