Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007476.1 Corchorus olitorius cultivar O-4 contig07501, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 760

Length: 1268
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27


Found at i:545 original size:21 final size:21

Alignment explanation


    Indices: 386--544  Score: 198
    Period size: 21  Copynumber: 7.6  Consensus size: 21

        376 CTTAGGCAAT

                    *    *       
        386 TCCAATGAGCTTGAAACCTTC
          1 TCCAATGAACTTGGAACCTTC

              *     *            
        407 TCTAATGATCTTGGAACCTTC
          1 TCCAATGAACTTGGAACCTTC

                                 
        428 TCCAATGAACTTGGAACCTTC
          1 TCCAATGAACTTGGAACCTTC

                                 
        449 TCCAATGAACTTGGAACCTTC
          1 TCCAATGAACTTGGAACCTTC

                    *             
        470 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAACTTGGAACCTT-C

                    *             
        491 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAACTTGGAACCTT-C

                    *   *         
        512 TCCAATGAGCTTCGAA-CTTGC
          1 TCCAATGAACTTGGAACCTT-C

                        
        533 TCCAATGAACTT
          1 TCCAATGAACTT

        545 CTAGCATCTT


Statistics
Matches: 129,  Mismatches: 8, Indels: 2
        0.93            0.06        0.01

Matches are distributed among these distances:
  20    3  0.02
  21  126  0.98

ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30


Consensus pattern (21 bp):   
TCCAATGAACTTGGAACCTTC
Done.