Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007485.1 Corchorus olitorius cultivar O-4 contig07510, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 646

Length: 1078
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36


Found at i:250 original size:12 final size:12

Alignment explanation


    Indices: 233--271  Score: 60
    Period size: 12  Copynumber: 3.2  Consensus size: 12

        223 AACAGCTGGG

                        
        233 TATTATATATAC
          1 TATTATATATAC

                         
        245 TATTATATACTAC
          1 TATTATATA-TAC

              *         
        258 TAATATATATAC
          1 TATTATATATAC

              
        270 TA
          1 TA

        272 ATTAAAAAGA


Statistics
Matches: 25,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  12   14  0.56
  13   11  0.44

ACGTcount: A:0.44, C:0.10, G:0.00, T:0.46


Consensus pattern (12 bp):   
TATTATATATAC

Done.