Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007490.1 Corchorus olitorius cultivar O-4 contig07515, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 697

Length: 1162
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.40


Found at i:42 original size:21 final size:20

Alignment explanation


    Indices: 11--59  Score: 62
    Period size: 21  Copynumber: 2.4  Consensus size: 20

          1 CTTATCTAGT

                 *            * 
         11 TTTATCAAGTAATTTAGTTA
          1 TTTATTAAGTAATTTAGTAA

                        *        
         31 TTGTATTAAGTATTTTAGTAA
          1 TT-TATTAAGTAATTTAGTAA

                    
         52 TTTATTAA
          1 TTTATTAA

         60 ACTTTCATTA


Statistics
Matches: 25,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  20    8  0.32
  21   17  0.68

ACGTcount: A:0.35, C:0.02, G:0.10, T:0.53


Consensus pattern (20 bp):   
TTTATTAAGTAATTTAGTAA
Done.