Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007495.1 Corchorus olitorius cultivar O-4 contig07520, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 801

Length: 1335
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.30


Found at i:1248 original size:15 final size:15

Alignment explanation


    Indices: 1230--1289  Score: 57
    Period size: 15  Copynumber: 4.0  Consensus size: 15

       1220 CGCCAATGAT

                         * 
       1230 GTTTCCACCTATGGC
          1 GTTTCCACCTATGCC

                 *    *    
       1245 GTTTCAACCTTTGCC
          1 GTTTCCACCTATGCC

              *   * *      
       1260 GTATCCGCGTATGCC
          1 GTTTCCACCTATGCC

               *           
       1275 GTTGCCACCTATGCC
          1 GTTTCCACCTATGCC

       1290 ATACCAACCC


Statistics
Matches: 33,  Mismatches: 12, Indels: 0
        0.73            0.27        0.00

Matches are distributed among these distances:
  15   33  1.00

ACGTcount: A:0.13, C:0.35, G:0.20, T:0.32


Consensus pattern (15 bp):   
GTTTCCACCTATGCC
Done.