Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007507.1 Corchorus olitorius cultivar O-4 contig07532, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 817

Length: 1362
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33


Found at i:191 original size:45 final size:45

Alignment explanation


    Indices: 140--266  Score: 227
    Period size: 45  Copynumber: 2.8  Consensus size: 45

        130 AATTCTACTT

                                                         
        140 CATCTCTAGGTAATTCATCAAAATAAAGCTAATATTATACTCCTC
          1 CATCTCTAGGTAATTCATCAAAATAAAGCTAATATTATACTCCTC

                      *                         *        
        185 CATCTCTAGGCAATTCATCAAAATAAAGCTAATATTCTACTCCTC
          1 CATCTCTAGGTAATTCATCAAAATAAAGCTAATATTATACTCCTC

                                       *         
        230 CATCTCTAGGTAATTCATCAAAATAAACCTAATATTA
          1 CATCTCTAGGTAATTCATCAAAATAAAGCTAATATTA

        267 ATTGTTGCTT


Statistics
Matches: 77,  Mismatches: 5, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  45   77  1.00

ACGTcount: A:0.39, C:0.23, G:0.06, T:0.32


Consensus pattern (45 bp):   
CATCTCTAGGTAATTCATCAAAATAAAGCTAATATTATACTCCTC
Done.