Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007517.1 Corchorus olitorius cultivar O-4 contig07542, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 645

Length: 1075
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37


Found at i:128 original size:27 final size:27

Alignment explanation


    Indices: 92--165  Score: 69
    Period size: 28  Copynumber: 2.7  Consensus size: 27

         82 TCCGGCATTT

                *                *     
         92 AAGGACAAAACTGTAATTTAGTTAACC
          1 AAGGGCAAAACTGTAATTTAGCTAACC

             *   *                   *   
        119 AGGGGTAAAA-TGGTAATTTTAGCTGACC
          1 AAGGGCAAAACT-GTAA-TTTAGCTAACC

                       *       
        147 AAGGGCAAAACAGTAATTT
          1 AAGGGCAAAACTGTAATTT

        166 TGACATCTTA


Statistics
Matches: 36,  Mismatches: 8, Indels: 6
        0.72            0.16        0.12

Matches are distributed among these distances:
  26    1  0.03
  27   14  0.39
  28   21  0.58

ACGTcount: A:0.41, C:0.12, G:0.22, T:0.26


Consensus pattern (27 bp):   
AAGGGCAAAACTGTAATTTAGCTAACC
Done.