Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007520.1 Corchorus olitorius cultivar O-4 contig07545, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 661

Length: 1103
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29


Found at i:701 original size:33 final size:33

Alignment explanation


    Indices: 618--703  Score: 82
    Period size: 33  Copynumber: 2.6  Consensus size: 33

        608 AAATGGTCGG

                     **           **      *  
        618 TGCCGCCCTTGGTGGGCGGCGTGGCCATGGTCA
          1 TGCCGCCCTAAGTGGGCGGCGTCACCATGGGCA

                    *   *            *     * 
        651 TGCCGCCCAAAGAGGGCGGCGTCACTATGGGGA
          1 TGCCGCCCTAAGTGGGCGGCGTCACCATGGGCA

                     *          
        684 TGCCGCCCTCAGTGGGCGGC
          1 TGCCGCCCTAAGTGGGCGGC

        704 ATGATCTTGG


Statistics
Matches: 41,  Mismatches: 12, Indels: 0
        0.77            0.23        0.00

Matches are distributed among these distances:
  33   41  1.00

ACGTcount: A:0.12, C:0.31, G:0.41, T:0.16


Consensus pattern (33 bp):   
TGCCGCCCTAAGTGGGCGGCGTCACCATGGGCA
Done.