Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007527.1 Corchorus olitorius cultivar O-4 contig07552, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 906

Length: 1511
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.22


Found at i:116 original size:7 final size:7

Alignment explanation


    Indices: 104--134  Score: 62
    Period size: 7  Copynumber: 4.4  Consensus size: 7

         94 TAGCAAGCAC

                   
        104 GGCACCA
          1 GGCACCA

                   
        111 GGCACCA
          1 GGCACCA

                   
        118 GGCACCA
          1 GGCACCA

                   
        125 GGCACCA
          1 GGCACCA

               
        132 GGC
          1 GGC

        135 CACGCGAAGC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   24  1.00

ACGTcount: A:0.26, C:0.42, G:0.32, T:0.00


Consensus pattern (7 bp):   
GGCACCA

Done.