Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007528.1 Corchorus olitorius cultivar O-4 contig07553, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 748

Length: 1248
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.23


Found at i:1157 original size:21 final size:21

Alignment explanation


    Indices: 1131--1176  Score: 83
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       1121 AGGCCTTGCT

                                 
       1131 CAAGAGAATAGTCGACTAAAG
          1 CAAGAGAATAGTCGACTAAAG

                  *              
       1152 CAAGAGGATAGTCGACTAAAG
          1 CAAGAGAATAGTCGACTAAAG

                
       1173 CAAG
          1 CAAG

       1177 TCGACAAGAG


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.46, C:0.15, G:0.26, T:0.13


Consensus pattern (21 bp):   
CAAGAGAATAGTCGACTAAAG
Done.