Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007530.1 Corchorus olitorius cultivar O-4 contig07555, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 738

Length: 1230
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.39


Found at i:135 original size:32 final size:32

Alignment explanation


    Indices: 85--156  Score: 99
    Period size: 32  Copynumber: 2.2  Consensus size: 32

         75 TTCAAAGAAC

                         *          *     * 
         85 ATTTTGTCCTACTTTGTCAAAATTTGAGGGTT
          1 ATTTTGTCCTACTATGTCAAAATTCGAGGGCT

                   *  *                     
        117 ATTTTGTTCTTCTATGTCAAAATTCGAGGGCT
          1 ATTTTGTCCTACTATGTCAAAATTCGAGGGCT

                    
        149 ATTTTGTC
          1 ATTTTGTC

        157 TATCAATCTG


Statistics
Matches: 34,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  32   34  1.00

ACGTcount: A:0.21, C:0.14, G:0.18, T:0.47


Consensus pattern (32 bp):   
ATTTTGTCCTACTATGTCAAAATTCGAGGGCT
Done.