Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007533.1 Corchorus olitorius cultivar O-4 contig07558, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 756

Length: 1261
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.26


Found at i:117 original size:14 final size:14

Alignment explanation


    Indices: 100--127  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

         90 ATGCTTGAAT

                          
        100 GCACATGGAAAATG
          1 GCACATGGAAAATG

                          
        114 GCACATGGAAAATG
          1 GCACATGGAAAATG

        128 AACAAATAAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.43, C:0.14, G:0.29, T:0.14


Consensus pattern (14 bp):   
GCACATGGAAAATG

Found at i:1244 original size:16 final size:16

Alignment explanation


    Indices: 1223--1255  Score: 57
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       1213 GAGGTACCAG

                            
       1223 AATTAAGATCTGCCCA
          1 AATTAAGATCTGCCCA

                        *   
       1239 AATTAAGATCTGTCCA
          1 AATTAAGATCTGCCCA

             
       1255 A
          1 A

       1256 GTGTGA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.39, C:0.21, G:0.12, T:0.27


Consensus pattern (16 bp):   
AATTAAGATCTGCCCA
Done.