Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007534.1 Corchorus olitorius cultivar O-4 contig07559, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 823

Length: 1372
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30


Found at i:311 original size:16 final size:16

Alignment explanation


    Indices: 290--322  Score: 57
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        280 GAGGTACCAG

                            
        290 AATTAAGATCTGCCCA
          1 AATTAAGATCTGCCCA

                        *   
        306 AATTAAGATCTGTCCA
          1 AATTAAGATCTGCCCA

             
        322 A
          1 A

        323 GTGTGAAGAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.39, C:0.21, G:0.12, T:0.27


Consensus pattern (16 bp):   
AATTAAGATCTGCCCA
Done.