Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007535.1 Corchorus olitorius cultivar O-4 contig07560, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 866

Length: 1444
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32


Found at i:1082 original size:4 final size:4

Alignment explanation


    Indices: 1073--1103  Score: 55
    Period size: 4  Copynumber: 8.0  Consensus size: 4

       1063 AAAATATTCA

                                                   
       1073 AATC AATC AATC AATC AATC AATC -ATC AATC
          1 AATC AATC AATC AATC AATC AATC AATC AATC

       1104 TAATATATAT


Statistics
Matches: 26,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   3    3  0.12
   4   23  0.88

ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26


Consensus pattern (4 bp):   
AATC

Found at i:1113 original size:2 final size:2

Alignment explanation


    Indices: 1106--1131  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

       1096 CATCAATCTA

                                                  
       1106 AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT

       1132 TAATTGGACA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.