Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007538.1 Corchorus olitorius cultivar O-4 contig07563, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 751

Length: 1252
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:813 original size:49 final size:47

Alignment explanation


    Indices: 719--860  Score: 162
    Period size: 49  Copynumber: 3.0  Consensus size: 47

        709 GAGCGTGCCA

                                             *       *      
        719 ATCAATTTTGTC-AAAAATTTGATAAAAAGTGCGATGAAAATTAAAAG
          1 ATCAATTTTGTCTAAAAA-TTGATAAAAAGTGCAATGAAAAATAAAAG

                                   *                          
        766 ATCAATTTTGTCTTAAAAATTGAGAAAAAGATGCAA-GTAAAAATAAAAG
          1 ATCAATTTTGTC-TAAAAATTGATAAAAAG-TGCAATG-AAAAATAAAAG

            *           *                     *      *    
        815 TTCAATTTTGTAGTAAAAATTGATAAAAAGTGCAGTGAAAAGTAAA
          1 ATCAATTTTGT-CTAAAAATTGATAAAAAGTGCAATGAAAAATAAA

        861 GGATTGCTTG


Statistics
Matches: 81,  Mismatches: 8, Indels: 11
        0.81            0.08        0.11

Matches are distributed among these distances:
  47   12  0.15
  48   23  0.28
  49   46  0.57

ACGTcount: A:0.50, C:0.06, G:0.15, T:0.29


Consensus pattern (47 bp):   
ATCAATTTTGTCTAAAAATTGATAAAAAGTGCAATGAAAAATAAAAG
Done.