Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007546.1 Corchorus olitorius cultivar O-4 contig07571, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 975

Length: 1625
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34


Found at i:1091 original size:39 final size:39

Alignment explanation


    Indices: 1037--1114  Score: 156
    Period size: 39  Copynumber: 2.0  Consensus size: 39

       1027 TAAATCTTGG

                                                   
       1037 ATTAAGTTTGTGATTAAATTTTAGAAATTGATTTGATGT
          1 ATTAAGTTTGTGATTAAATTTTAGAAATTGATTTGATGT

                                                   
       1076 ATTAAGTTTGTGATTAAATTTTAGAAATTGATTTGATGT
          1 ATTAAGTTTGTGATTAAATTTTAGAAATTGATTTGATGT

       1115 TACACAATTT


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  39   39  1.00

ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49


Consensus pattern (39 bp):   
ATTAAGTTTGTGATTAAATTTTAGAAATTGATTTGATGT
Done.