Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007547.1 Corchorus olitorius cultivar O-4 contig07572, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 604

Length: 1008
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.41


Found at i:473 original size:15 final size:15

Alignment explanation


    Indices: 443--484  Score: 75
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        433 TTACTTTGTT

                            
        443 TTGTTTTCTAGTTTAA
          1 TTGTTTTCT-GTTTAA

                           
        459 TTGTTTTCTGTTTAA
          1 TTGTTTTCTGTTTAA

                       
        474 TTGTTTTCTGT
          1 TTGTTTTCTGT

        485 CAACCTCTGT


Statistics
Matches: 26,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  15   17  0.65
  16    9  0.35

ACGTcount: A:0.12, C:0.07, G:0.14, T:0.67


Consensus pattern (15 bp):   
TTGTTTTCTGTTTAA

Found at i:954 original size:29 final size:30

Alignment explanation


    Indices: 922--980  Score: 93
    Period size: 29  Copynumber: 2.0  Consensus size: 30

        912 ATTGTTTTGT

                                          
        922 GTTTTTGCGTTTTT-CTAAAAAAAAAAAAA
          1 GTTTTTGCGTTTTTACTAAAAAAAAAAAAA

                           * *            
        951 GTTTTTGCGTTTTTATTTAAAAAAAAAAAA
          1 GTTTTTGCGTTTTTACTAAAAAAAAAAAAA

        981 TTCTTTTCTT


Statistics
Matches: 27,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
  29   14  0.52
  30   13  0.48

ACGTcount: A:0.44, C:0.05, G:0.10, T:0.41


Consensus pattern (30 bp):   
GTTTTTGCGTTTTTACTAAAAAAAAAAAAA
Done.