Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007548.1 Corchorus olitorius cultivar O-4 contig07573, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 612

Length: 1021
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:423 original size:28 final size:28

Alignment explanation


    Indices: 388--443  Score: 85
    Period size: 28  Copynumber: 2.0  Consensus size: 28

        378 ATTGTTTTGT

                          *             
        388 GTTTTTGCGTTTTTCTAAAAAAAAAAAA
          1 GTTTTTGCGTTTTTATAAAAAAAAAAAA

                            **          
        416 GTTTTTGCGTTTTTATTTAAAAAAAAAA
          1 GTTTTTGCGTTTTTATAAAAAAAAAAAA

        444 TTCTTTTCTT


Statistics
Matches: 25,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  28   25  1.00

ACGTcount: A:0.41, C:0.05, G:0.11, T:0.43


Consensus pattern (28 bp):   
GTTTTTGCGTTTTTATAAAAAAAAAAAA
Done.